aliFreeFold

Maintenance

Please be aware that routine server maintenance is being performed and aliFreeFold(resp. aliFreeFoldMulti) will be accessible as soon as possible. — Maintenance! check the github repository

aliFreeFold & aliFreeFoldMulti

aliFreeFold

An approach has been devised to find the representative structure of a set of sub-optimal structures from homologous RNA sequences. AliFreeFold constitutes an alternative way to predict RNA secondary structures from a set of homologous sequences

If you are using our tool, please cite our paper

Jean-Pierre Séhi Glouzon, Aïda Ouangraoua, aliFreeFold: an alignment-free approach to predict secondary structure from homologous RNA sequences, Bioinformatics, Volume 34, Issue 13, 01 July 2018, Pages i70–i78

aliFreeFoldMulti

An extension of the aliFreeFold algorithm. aliFreeFoldMulti improves on aliFreeFold by additionally computing the conserved structure for each sequence

If you are using our tool, please cite our paper

Marc-André Bossanyi, Valentin Carpentier, Jean-Pierre S Glouzon, Aïda Ouangraoua, Yoann Anselmetti, aliFreeFoldMulti: alignment-free method to predict secondary structures of multiple RNA homologs, NAR Genomics and Bioinformatics, Volume 2, Issue 4, December 2020, lqaa086